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10X Genomics cell ranger s mkfastq function
Cell Ranger S Mkfastq Function, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+mkfastq/function+mkfastq/pmc12746708-246-10-14
Average 86 stars, based on 1 article reviews
cell ranger s mkfastq function - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

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Article Title: Monocytes can efficiently replace all brain macrophages and fetal liver monocytes can generate bona fide SALL1 + microglia
Article Snippet: Cell Ranger mkfastq , 10x Genomics , RRID: SCR_017344.

Article Title: Extraembryonic gut endoderm cells undergo programmed cell death during development.
Article Snippet: For the re-processing of E8.75 gut endoderm samples from Nowotschin et al.4, raw FASTQ files were obtained from GSE123046 (E8.75 GFP+ and GFP−), processed with 10x Genomics Cell Ranger mkfastq and counted as described above.

Article Title: The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1
Article Snippet: Raw base calls were demultiplexed to obtain sample-specific FASTQ files using Cell Ranger mkfastq and default parameters (v6; 10x Genomics; RRID:SCR_017344).

Article Title: Secreted neurofilament light chain after neuronal damage induces myeloid cell activation and neuroinflammation.
Article Snippet: Cell Ranger mkfastq (v6.0.1, 10x Genomics) was used to generate demultiplexed FASTQ files.

Sequencing:

Article Title: Cytomegalovirus host receptor expression in the human fetal inner ear.
Article Snippet: The single-nucleus gene expression libraries were prepared using the 10x Genomics Chromium platform, employing the Chromium Next GEM Single Cell 3′ Library & Gel Bead Kit v3.1 and the Chromium Next GEM Chip G Single Cell Kit (10x Genomics). .. The Cell Ranger mkfastq (10x Genomics) was utilized to generate FASTQ files from the raw sequencing reads. .. The demultiplexed FASTQ files were processed through the 10x Genomics Cell Ranger 6.1.0 pipeline (available at http://support.10xgenomics.com/), aligning the reads to the human reference genome GRCh38, including both intronic and exonic regions.

Article Title: Epigenetic inheritance of diet-induced and sperm-borne mitochondrial RNAs.
Article Snippet: .. Raw sequencing data were demultiplexed using the Cell Ranger (10x Genomics) mkfastq to obtain fastq files for each sample. ..

Article Title: Selenoprotein-mediated redox regulation shapes the cell fate of HSCs and mature lineages
Article Snippet: The libraries were pooled together and sequenced with NovaSeq 6000 (illumina) at a depth of ~ 647M reads per sample. .. Raw sequencing data was demultiplexed and converted to the standard FASTQ files by executing cell ranger mkfastq (6.1.2, 10x Genomics). .. Gene counts of each sample were generated from the FASTQs by executing cellranger count (6.1.2, 10x Genomics) with mm10-2020-A as the reference dataset.

Article Title: Precise genetic control of ATOH1 enhances maturation of regenerated hair cells in the mature mouse utricle
Article Snippet: Gene expression libraries were multiplexed and sequenced on the Novaseq 6000 (Illumina) with the following read structure: Read 1: 28 cycles, Read 2: 72 - 100 cycles, Index Read 1: 8 cycles. .. Cell Ranger mkfastq (10x Genomics) was used to demultiplex the raw sequencing reads, and Cell Ranger count was used to align sequencing reads and generate a counts matrix. ..



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